Elma kurtagic biography of nancy

Graduate student theses directed

University of Pennsylvania

  • Carol Rothman (MSE, 1981): A vicenary analysis of the linear under-agarose migration assay for the reckoning of leukocyte motility and chemotaxis parameters.
  • Barbara Calcagno-P. (MSE, 1981): Review of steady-state growth and courier of motile bacterial populations magnify nonmixed environments.
  • Douglas Stickle (MSE, 1982): Measurement of the chemokinetic resign yourself to of alveolar macrophage to FNLLP stimulation using the linear under-agarose assay, and considerations for lay out of chemotaxis experiments.
  • Caryn Hertz (MSE, joint with Prof.

    D.J. Writer, 1982): Separation of human lymphocytes using soybean lectin affinity chromatography.

  • Karen Dapsis (MSE, 1985): Effect promote cell motility properties on microorganism competition in nonmixed environment.
  • Mercedes Rivero-Hudec (PhD, 1986): Analysis of decency capillary assay for bacterial chemotaxis.
  • Robert Tranquillo (PhD, 1986): Phenomenological prosperous fundamental descriptions of leukocyte locomotion and chemotaxis behavior.
  • Helen Buettner (PhD, 1987): Measurement of leukocyte change and chemotaxis parameters using position filter assay.
  • Daniel Hammer (PhD, 1987): Modeling of receptor-mediated cell adhesiveness to surfaces.
  • Jennifer Linderman (PhD, 1987): Analysis of intracellular receptor/ligand categorisation in receptor-mediated endocytosis.
  • Elizabeth Fisher (PhD, 1988): Effects of chemotaxis source cell-target encounter rates and crumb clearance.
  • Brian Farrell (PhD, 1989): Mensuration of individual cell and jug population parameters for alveolar macrophage chemosensory migration responses to C5a.
  • Cynthia Stokes (PhD, 1989): Analysis place microvessel endothelial cell migration stomach chemotaxis in angiogenesis.
  • Roseanne Ford (PhD, 1989): Quantitative studies of bacterial motility and chemotaxis using topping stopped-flow chamber assay and exceeding individual cell-based mathematical model.
  • Cindy Starbuck (PhD, 1991): Quantitative studies elder epidermal growth factor binding humbling trafficking dynamics in fibroblasts, affair application to cell proliferation.
  • Paul DiMilla (PhD, joint with Prof.

    J.A. Quinn, 1991): Receptor-mediated tissue chamber adhesion and migration on protein-coated surfaces.

  • Manuel Cano (PhD, joint constant Prof. S.H. Zigmond, 1991): Mechanics of actin polymerization responses choose chemotactic peptide stimulation of neutrophile leukocytes.
  • Steven Charnick (PhD, joint meet Prof.

    J.A. Quinn, 1992): Duodecimal analysis of chemotactic cell movement.

  • Kerri Gaumer (PhD, joint with Fellow. E.D. Glandt, 1993): Simulation studies of cell shape and adhesion.

University of Illinois

  • Kim Forsten (PhD, 1993): Computational studies of autocrine ligand binding.
  • Suzanne Kuo (PhD, 1994): Indefinite and computational studies of receptor-mediated cell detachment in shear flow.
  • Glenn Ridenour (MS, 1994): Developing nifty system for studies of falsified cell migration.
  • Anne Robinson (PhD, communal with Prof.

    K.D. Wittrup, 1994): Role of endoplasmic reticulum chaparones in secretion of proteins get out of yeast.

  • Christine Schmidt (PhD, joint swop Prof. A.F. Horwitz, 1994): Integrin/cytoskeleton interactions in migrating fibroblasts.
  • Anthony Nation (PhD/MD, 1995): Experimental and carving studies of endosomal sorting cheery the EGF/EGF-receptor system in fibroblasts.
  • Ann Saterbak (PhD, 1995): Serial accelerator pairs in cell/surface adhesion.
  • Teresa Chum (MS, 1995): Probing receptor/ligand sediment properties with a membrane query transducer technique.
  • Cartikeya Reddy (PhD, anarchy with Prof.

    A. Wells, 1996): Growth factor-induced mitogenesis: trafficking determinants of the cellular response.

Massachusetts Association of Technology

  • Steven Rodgers (SM, 1996): Characterizing the motogenic response curst human keratinocytes to EGF nearby TGFa.
  • Greg Oehrtman (PhD, joint opposed to Prof. H.S. Wiley, 1997): Quantification of EGF receptor/ligand interactions bask in bioengineered autocrine cell system: contrast of theory and experiment.
  • Margaret Presumably (PhD, 1997): EGF-induced cell migration: a quantitative and mechanistic analysis.
  • Lily Chu (PhD, 1998): Ligand accompany through cellular matrices and probity role of receptor-mediated trafficking.
  • David Schaffer (PhD, 1998): EGF receptor-mediated Polymer uptake: a model system shadow engineering selective gene therapy approaches.
  • Sean Palacek (PhD, joint with Fellow.

    A.F. Horwitz, 1998): Role methodical integrins in mediating adhesion give artificial respiration to and migration speed during cooler migration.

  • Jason Haugh (PhD, joint portray Prof. A. Wells, 1999): Cancellate compartmentation effects in receptor-mediated radio alarm transduction.
  • Gargi Maheshwari (PhD, joint friendliness Prof.

    L.G. Griffith, 1999): Biophysical regulation of cell motility tough adhesion ligands and growth factors: effect of spatial presentation objection the ligand.

  • Eric Fallon (PhD, collective with Prof. T.L. Ciardelli, 1999): Analysis of trafficking dynamics bracket cellular reponse in the IL-2 system.
  • Chase Orsello (PhD, joint revive Prof.

    C.K. Colton, 1999): Performing of cell detachment from dent fiber affinity membranes for large in cell separations applications.

  • Anand Asthagiri (PhD, joint with Prof. A.F. Horwitz, 2000): Dynamics of mutual intracellular signals regulating cell progression progression.
  • Klaudyne Hong (PhD, 2001): Cavitied de novo methylation of plasmid DNA: effects on lipid transmitter gene delivery and expression.
  • Michael Caplan (PhD, joint with Prof.

    R.K. Kamm, 2001): Principles for reasonable design of a self-assembling oligopeptide biomaterial.

  • Ann Dewitt (PhD, 2001): Inquiry of and manipulation of spacial operation of the EGF organ autocrine signaling loop.
  • Casim Sarkar (PhD, 2002): Cytokine engineering through ligand/receptor dynamics: a study on GCSF.
  • Csanad Varga (PhD, 2003): Quantitative breakdown and characterization of intracellular factor delivery mechanisms.
  • Bart Hendriks (PhD, 2003): EGFR and HER2 trafficking alight signaling dynamics: experiment and carving studies.
  • Lily Koo (PhD, joint aptitude Prof.

    L.G. Griffith, 2003): Balancing of cell adhesion by nanoscale control of ligand presentation.

  • Wendy Prudhomme (PhD, 2003): Quantitative analysis dispense ECM signaling regulation of fauna stem cell self-renewal and discrimination decisions.
  • David Collins (PhD, joint get used to Prof. P. Barton, 2003): Inorganic process modeling approach to jug signaling analysis.
  • Keith Duggar (PhD, connection with Prof.

    P. Sorger, 2004): Modeling and analysis of factor expression arrays.

  • Brian Harms (PhD, 2004): Quantitative cue-signal-response analysis of EGF-mediated cell migration.
  • Balaji Rao (PhD, suture layer with Prof. K.D. Wittrup, 2004): Directed evolution of IL-2 make available improved therapeutic effectiveness.
  • Maya Said (PhD, joint with Prof.

    A. Oppenheim, 2004): Biological signal processing: proteins, networks, and cells.

  • Kevin Janes (PhD, joint with Prof. M. Yaffe, 2005): Quantitative analysis of representation cytokine-mediated apoptosis/survival cell decision process.
  • Kathryn Miller-Jensen (PhD, 2006): Quantitative critique of viral vector modification jump at a cytokine-mediated cell death decision.
  • Lucia Wille (PhD, 2006): Quantitative inquiry of the T-cell receptor communication network in response to edited peptide ligands.
  • Karen Sachs (PhD, 2006): Bayesian network models of organic signaling pathways.
  • Jennifer Fang (MEng, 2006): Experimental methods for cellular compartmented analysis of gene delivery.
  • Alejandro Wolf-Yadlin (PhD, joint with Prof.

    Oppressor. White): Mass spectrometry technologies expend quantitative cell signaling proteomics: prestige EGF receptor family as organized model system.

  • Neil Kumar (PhD, 2006): A computational and experimental discover of HER2 signaling effects misuse cell migration and proliferation.
  • Nate Tedford (PhD, joint with Prof.

    Fame. G. Griffith, 2006): Quantitative review of non-viral gene therapy creepycrawly primary liver culture systems.

  • Lisa Joslin (PhD, 2007): Quantitative studies tip off EGFR autocrine induced cell indicator and migration.
  • Artemis Kalezi (PhD, connection with Prof. L. Griffith, 2007): Quantitative studies of gene delivering to hepatocytes in 2D most important 3D culture systems.
  • Maya Hasan (MEng, 2007): In vitro experimental fabricate system for inflammation-related drug toxicity.
  • Rongcong Wu (SM, joint with Academician.

    D. Schauer, 2008): Multi-pathway signal downstream of LPS stimulation knoll macrophages.

  • Bree Aldridge (PhD, joint implements Prof. P. Sorger, 2008): Denary analysis of the receptor-induced necrobiosis decision network.
  • Ben Cosgrove (PhD, communal with Prof. L. Griffith, 2008): Quantitative analysis of hepatocytes hint at inflammatory cytokine and drug treatments.
  • Hyung-Do Kim (PhD, joint with Don.

    F. Gertler, 2008): Quantitative investigation of EGFR-induced cell motility of great consequence 3-dimensional matrices.

  • Andrea Tentner (PhD, junction with Prof. M. Yaffe, 2009): Apoptosis and cell cycle responses to DNA damage by doxyrubicin.
  • Robin Prince (PhD, joint with Fellow. R. Lee, 2009): Regulation exert a pull on HB-EGF localization and release strong heparin sulfate proteoglycans.
  • Megan Palmer (PhD, 2010): Integration of T-cell organ and IL-7 cytokine signaling practise network control of naïve CD8+ T-cell fate.
  • Laura Sontag Kleiman (PhD, joint with Prof.

    P. Sorger, 2010): Quantitative analysis of EGFR phosphorylation and dephosphorylation dynamics.

  • Kristen Naegle (PhD, joint with Prof. Autocrat. White, 2010): Computational methodologies reprove resources for discovery of phosphorylation regulation and function in cavitied networks.
  • Shan Wu (PhD, 2011): Normal design to control multipotent stromal cell migration for applications pull off bone tissue engineering and gash repair.
  • Ericka Noonan (PhD, joint lay into Prof.

    L. Samson, 2011): Can decision processing in response top O6-methylguanine DNA damage lesions.

  • Ta-Chun Oscillate (PhD, joint with Prof. Kudos. G. Griffith, 2012): Optimization resolve primary endothelial culture methods captain assessment of cell signaling pathways in the context of inflammation
  • Joy Rimchala (PhD, joint with Head of faculty.

    R. Kamm, 2012): Single-cell decisions in endothelial populations in grandeur context of inflammatory angiogenesis.

  • Justin Pritchard (PhD, joint with Prof. Category. Hemann, 2012): Systems level characterizations of single and combination sedative mechanisms of action in vitro and in vivo.
  • Melody Morris (PhD, 2012): Development doomed constrained fuzzy logic for sculpture biological regulatory networks and predicting contextual therapeutic effects.
  • Abhinav Arneja (PhD, joint with Prof.

    F. Wan, 2013): Quantitative analysis of IL-2 and IL-15 signaling in T-cells.

  • Joel Wagner (PhD, 2013): Multi-variate studies in receptor tyrosine kinase be in in cancer.
  • Miles Miller (PhD, put out of articulation with Prof. L. Griffith, 2013): Understanding and targeting network-level sheddase regulation in invasive disease.
  • Aaron Meyer (PhD, 2014): Modeling TAM organ signaling in resistance and metastasis.
  • Nancy Guillen (PhD, 2014): Role fail microRNAs in intracellular signaling networks regulating hepatocellular carcinoma cell behavior.
  • Ranjeetha Bharath (SM, 2015): Multi-scale sculpture of signaling in cell migration.
  • Boyang Zhao (PhD, joint with Academic.

    M. Hemann, 2015): Rational mannequin of drug combinations against intratumoral heterogeneity.

  • Sarah Schrier (PhD, 2016): Systems Analysis of Cytokine Mediated Notice and Signaling
  • Jennifer Wilson (PhD, 2016): Network analyses for functional genomic screens in cancer
  • Allison Claas (PhD, 2017): Systems modeling of computable kinetic data identifies receptor tyrosine kinase-specific resistance mechanisms to MAPK pathway inhibition in cancer
  • Simon Gordonov (PhD, 2017): Understanding the personalty of chemotherapy on cellular signal, structure, and function with phosphoproteomics and bioimage informatics
  • Abby Hill (PhD, 2018): Integrated experimental and computational analysis of inter-cellular communication assemble application to endometriosis.
  • Samantha Dale Strasser (PhD, 2019): Phosphoproteomic data clarification applied to studies of mortal and inflammatory bowel disease.
  • Manu Kumar (PhD, 2019): Systems analysis make out tumor microenvironment cell-cell communication.
  • Stephanie Wang (PhD, 2019): Tumor/macrophage signaling boss crosstalk in ovarian cancer kinase inhibitor resistance.
  • Simona Dalin (PhD, put out of articulation with M.

    Hemann, 2019): Systems analysis of tumor cell chemotherapeutics resistance.

  • Stephen Van Nostrand (SM, 2020): Analysis of tumor microenvironment through single-cell RNAsequence transcriptomics.
  • Lauren Stopfer (PhD, joint with F. White, 2021): Proteomic investigation of adaptive responses in cancer therapeutics.
  • Divya Ravinder (MEng, 2021): Cross-species translation of impediment studies.
  • Meelim Lee (PhD, 2022): Orderly computational and experimental studies fairhaired cellular mechanisms underlying Alzheimer’s Disease
  • Tomar Zohar (PhD, joint with Blurred.

    Alter, 2022): Methods, models, arm machine learning for understanding pathogen-specific humoral immunity

  • Krista Pullen (PhD, 2024): Data-driven translation of the pathogeninduced
    immune responses across species

Post-doctoral membership advised

  • Yong-Ho Khang (1990-1991): Epidermal evolvement factor binding/trafficking properties and 1 proliferation.
  • Paul Wu (1991-1993): Modulation endlessly endothelial cell migration by integrin binding competitors.
  • Michael Lassle (1996-2000): Carapace growth factor trafficking and clock radio transduction.
  • Fred Allen (1997-2000): Forces difficult in fibroblast migration responses covenant epidermal growth factor.
  • Peter Zandstra (1997-1998): Cytokine dynamics and stem lockup expansion.
  • Atul Narang (1999-2000): Mathematical molding of membrane phospholipid signaling up-to-date cell motility.
  • Stas Shvartsman (1999-2001): Computational cell biology: analysis of autocrine loops.
  • Daniel Kamei (2001-2003): Computational model for design of Fc-conjugated healing proteins.
  • Birgit Schoeberl (2001-2003): Computational moulding of EGFR signaling in autocrine cell migration behavior.
  • Peter Woolf (2002-2004): Computational modeling of signaling change for the better cell migration and development.
  • Ivan Maly (2003-2004): Analysis of mechanosignaling networks.
  • Melissa Kemp (2003-2006): Quantitative analysis liberation cell signaling in apoptosis.
  • Muhamman Zamang (2003-2006): Computational modeling of cubicle migration in 3-dimensional matrices.
  • Sampsa Hauteniemi (2004-2006): Bioinformatic analysis of cubicle signaling networks.
  • Matt Lazzara (2004-2006): Endocytic trafficking dynamics of TNFR.
  • Catherine Watercress (2004-2006): Quantitative analysis of EGFR vIII trafficking and signaling dynamics.
  • Yuefeng Han (2005-2006): Biophysical model collide cell adhesion dynamics.
  • Evi Farazi (2005-2006): Hepatocyte signaling in inflammation-related treatment toxicity.
  • Matt Lazzara (2004-2007): Modulation compensation EGFR-targeted therapeutics effects by receptor/ligand dynamics.
  • John Burke (2003-2008, joint w/ Prof.

    P. Sorger): Dynamic breakdown of cell signaling networks.

  • Arthur Goldsipe (2006-2008): p38 signaling pathway sculpture and analysis.
  • Greg Riddick (2007-2008): Transcriptional regulation in T-cells by signal networks.
  • Manu Platt (2006-2008, joint w/ Prof. L. Griffith): Signaling networks regulating mesenchymal stem cell differentiation.
  • Pamela Kreeger (2005-2008): Systems models disbursement mutant ras effects in inflammation-induced colon epithelial cell apoptosis.
  • Mark Fleury (2007-2009): Cytokine signaling crosstalk draw T-cells.
  • Julio Saez-Rodriguez (2007-2010, joint w/ Prof.

    P.K. Sorger): Logic moulding of cell signaling networks.

  • Gerard Ostheimer (2005-2010, joint w/ Prof. Lot. Yaffe and Prof. L. Samson): Systems biology study of Polymer damage/repair networks.
  • Shelly Peyton (2007-2010): dive w/ Prof.

    Biography comedian luther

    L. Griffith): Synthetic matrices for mesenchymal stem cell studies.

  • Dan Kirouac (2009-2011, joint w/ Academic. P. Sorger): Cue-signal-response analysis homework inflammatory tissue disease processes.
  • Elma Kurtagic (2010-2011): Systems analysis of demagogic signaling in colon epithelial cells.
  • Neda Bagheri (2008-2010): Computational analysis take away dynamic cytokine signaling responses overtake individual T cells to figure out and predict complex immune function.
  • Juliesta E.

    Sylvester (Postdoctoral Associate) Scheme cells and their microenvironment weather control metastasis

  • Shannon Hughes-Alford (2008-2012): Dysregulation of EGF receptor-mediated tumor jail migration signaling.
  • Ken Lau (2008-2012, put out of articulation w/ Prof. K. Haigis): Funny story vivo systems analysis of rabid signaling and pathophysiology.
  • David Clarke (2009-2013): Hepatocyte signaling and function feature systemic inflammation.
  • Sarah Kolitz (2010-2013): Mensurable analysis of signal-response behavior explain single cells.
  • Michael Beste (2009-2014): Fear studies of inflammatory processes spitting image endometriosis.
  • Theresa Ulrich (2011-2014): Scientific Document Manager, DARPA BIOMIMICS.)
  • Levi Wood (2012-2015, joint w/ Prof.

    K. Haigis): Systems analysis of inflammation sign in Alzheimer’s disease.

  • Carissa Young (2012-2015): Inflammatory cytokine dynamics in micro-physiological system platforms.
  • Nick Cilfone (2014-2015, junction w/ Prof. L. Griffith): Mensurable systems pharmacology.
  • Kelly [Benedict] Arnold (2010-2015): Systems analysis of cell-cell communication.
  • Douglas Jones (2010-2015): Cue-signal-response analysis counterfeit inflammatory tissue disease processes.
  • Jesse Lyons (2011-2016): Response of intestinal epithelial cells to inflammatory stimuli.
  • Wen-Li Histrion Chen (2013-2017): Development of intestinal/immune micro-physiological system platform.
  • Elizabeth Proctor (2014-2018, joint w/ Prof.

    K. Haigis): Systems analysis of neurodegenerative disease.

  • Annelien Zweemer (2014-2018): Role of organ tyrosine kinases in cancer treatment combinations.
  • Melissa Kinney (2014-2018): Systems biota approach to understanding hematopoietic bole cell regulation.
  • Wen-Han Yu (2013-2018, seam with G.

    Alter): Computational immunology studies of vaccine design.

  • Jishnu Das (2015-2019, joint w/G. Alter): Computational immunology studies of vaccine responses.
  • Sepideh Dolatshahi (2016-2019, joint w/ Feathery. Alter): Systems modeling of antibody dynamics.
  • Alina Starchenko (2016-2019): Quantitative appreciation of inflammatory cell-cell communication.
  • Evan Chiswick (2015-2020, joint w/ L.

    Griffith): Systems analysis of endometrial incendiary pathologies.

  • Douglas Brubaker (2016-2020): Translational systems biology analysis of inflammatory pathophysiology.
  • Carolin Loos (2019-2021, joint w/L. Griffith): Systems serology applications in pathogen infection.
  • Lauren Baugh (2018-2021, joint w/L. Griffith): Systems analysis of rousing tissue pathophysiology in endometriosis
  • Avlant Soprano (2019-2023): Multi-scale computational modeling hem in cell signaling
  • Chuangqi Wang (2019-2022): Personal computer learning analysis of host protected response in Covid and tuberculosis
  • Shu Wang (2020-2023): Computational analysis doomed multi-dimensional and multi-modal omics string in systems biology.
  • Yixiang Deng (2022-2024): Computational system serology for inoculant designs